PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.13G128200.3.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family LBD
Protein Properties Length: 288aa    MW: 32347.1 Da    PI: 6.641
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.13G128200.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260134.83.3e-4271061100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          +CaaCk+lrrkC+++C++apyfp++qp kf  vh++FGasnv kll++l++ +reda++sl+yeAe r+rdPvyG+vg+i+ lqq+l+ql
  Manes.13G128200.3.p   7 PCAACKFLRRKCTPECIFAPYFPSDQPLKFSSVHRVFGASNVAKLLNELNTAQREDAVNSLAYEAEERLRDPVYGCVGLISILQQRLKQL 96 
                          7***************************************************************************************** PP

               DUF260  91 kaelallkee 100
                          +++l ++k+e
  Manes.13G128200.3.p  97 QNDLYHAKKE 106
                          ****999887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.6536107IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-417104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MSSSNSPCAA CKFLRRKCTP ECIFAPYFPS DQPLKFSSVH RVFGASNVAK LLNELNTAQR  60
EDAVNSLAYE AEERLRDPVY GCVGLISILQ QRLKQLQNDL YHAKKELAQY VGPSAMLPIL  120
QPPMFMPQQQ FPMMGIATGP AHGGQLMIRD HPQQPHQHPT NQQQQQQQFF EAQQLAATVA  180
VRDQQELFRA HDQQQQNQSQ HQQELVRFNS GFDAAGSVTA TGYNQLSAAS LGDYDNSYQI  240
LSQAEHHHHQ LQEQLLIQQE QQQPPQQTQL QQQRSGSEEG RSVSPSC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012079178.11e-110PREDICTED: LOB domain-containing protein 36-like
RefseqXP_012079177.11e-110PREDICTED: LOB domain-containing protein 36-like
SwissprotQ9FKZ36e-80LBD36_ARATH; LOB domain-containing protein 36
TrEMBLA0A0B0PS921e-116A0A0B0PS92_G
STRINGVIT_07s0197g00020.t011e-101(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.17e-73ASYMMETRIC LEAVES 2-like 1